Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
comEAComE operon protein 1. (123 aa)    
Predicted Functional Partners:
APC11004.1
ComEC family competence protein.
 
  
 0.804
queF
NADPH-dependent 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.681
outO_1
Type 4 prepilin-like proteins leader peptide-processing enzyme.
   
  
 0.625
outO_2
Type 4 prepilin-like proteins leader peptide-processing enzyme.
   
  
 0.625
ppiD
Peptidyl-prolyl cis-trans isomerase D.
       0.624
tcpE
Toxin coregulated pilus biosynthesis protein E.
 
  
 0.613
comM
Competence protein ComM.
  
  
 0.594
epsF
Type II secretion system protein F.
  
  
 0.567
tcpT
Toxin coregulated pilus biosynthesis protein T.
  
  
 0.515
gspE
Putative type II secretion system protein E.
  
  
 0.515
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.