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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yycBPutative transporter YycB. (394 aa)    
Predicted Functional Partners:
APC10500.1
Ankyrin repeats (3 copies).
 
     0.850
guaD_1
Guanine deaminase.
     
 0.789
yaaA
Hypothetical protein; Belongs to the UPF0246 family.
  
    0.659
gltR_3
HTH-type transcriptional regulator GltR; Belongs to the LysR transcriptional regulatory family.
 
     0.612
APC10498.1
Hypothetical protein.
       0.550
ydhP
Inner membrane transport protein YdhP.
  
     0.428
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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