STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btrHTH-type transcriptional activator Btr. (296 aa)    
Predicted Functional Partners:
hpcB
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.887
hpcD
5-carboxymethyl-2-hydroxymuconate Delta-isomerase.
 
    0.875
tesE
2-hydroxyhexa-2,4-dienoate hydratase.
 
    0.818
hpcH
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.749
ttuB_1
Putative tartrate transporter.
 
  
 0.650
hpaR
Putative HTH-type transcriptional regulator.
 
  
 0.617
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.610
flgG
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.608
csgD
CsgBAC operon transcriptional regulatory protein.
  
    0.518
phnR
Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons.
  
    0.471
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.