STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpcD5-carboxymethyl-2-hydroxymuconate Delta-isomerase. (127 aa)    
Predicted Functional Partners:
hpcB
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.992
hpcE_1
Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase.
 
 
 0.981
hpcE_2
Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase.
 
 
 0.981
betB_1
NAD/NADP-dependent betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.966
tesE
2-hydroxyhexa-2,4-dienoate hydratase.
 
  
 0.959
hpcH
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.936
btr
HTH-type transcriptional activator Btr.
 
    0.875
hpaR
Putative HTH-type transcriptional regulator.
 
   
 0.821
hpaB
4-hydroxyphenylacetate 3-monooxygenase oxygenase component.
 
  
 0.675
yhdG
Putative amino acid permease YhdG.
  
     0.674
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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