Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hpaRPutative HTH-type transcriptional regulator. (151 aa)    
Predicted Functional Partners:
hpcD
5-carboxymethyl-2-hydroxymuconate Delta-isomerase.
 
   
 0.853
hpcB
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
   
 0.850
tesE
2-hydroxyhexa-2,4-dienoate hydratase.
 
     0.747
hpcH
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.695
btr
HTH-type transcriptional activator Btr.
 
  
 0.648
yhdG
Putative amino acid permease YhdG.
  
     0.574
hpaB
4-hydroxyphenylacetate 3-monooxygenase oxygenase component.
  
   
 0.523
APC13645.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
  
     0.402
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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