Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
shlB_2Hemolysin transporter protein ShlB precursor. (586 aa)    
Predicted Functional Partners:
fhaB_1
Filamentous hemagglutinin.
 
 
 0.936
shlA_3
Hemolysin precursor.
 
 
 0.807
shlA_2
Hemolysin precursor.
 
 
 0.806
shlA_1
Hemolysin precursor.
 
 
 0.804
hpmA
Hemolysin precursor.
 
 
 0.803
fhaB_2
Filamentous hemagglutinin.
 
 
 0.797
APC10523.1
Hypothetical protein.
       0.674
shlB_4
Hemolysin transporter protein ShlB precursor.
  
  
 
0.671
APC10907.1
Hypothetical protein.
  
  
 0.600
APC10832.1
CAAX amino terminal protease self- immunity.
  
     0.489
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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