STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpmAHemolysin precursor. (3919 aa)    
Predicted Functional Partners:
shlB_3
Hemolysin transporter protein ShlB precursor.
 
 
 0.949
shlB_1
Hemolysin transporter protein ShlB precursor.
 
 
 0.805
shlB_4
Hemolysin transporter protein ShlB precursor.
 
 
 0.805
shlB_2
Hemolysin transporter protein ShlB precursor.
 
 
 0.780
APC10536.1
Hypothetical protein.
       0.773
fhaB_2
Filamentous hemagglutinin.
 
     0.741
ceaC
Colicin-E3.
      
 0.636
APC13687.1
Tellurite resistance protein TerB.
 
     0.464
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.