Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hpmAHemolysin precursor. (3919 aa)    
Predicted Functional Partners:
shlB_3
Hemolysin transporter protein ShlB precursor.
 
 
 0.951
shlB_1
Hemolysin transporter protein ShlB precursor.
 
 
 0.810
shlB_4
Hemolysin transporter protein ShlB precursor.
 
 
 0.810
shlB_2
Hemolysin transporter protein ShlB precursor.
 
 
 0.803
APC10536.1
Hypothetical protein.
       0.773
fhaB_2
Filamentous hemagglutinin.
 
     0.741
ceaC
Colicin-E3.
      
 0.566
fimC
Chaperone protein FimC precursor.
  
  
 0.502
APC13687.1
Tellurite resistance protein TerB.
  
     0.463
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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