STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC10634.1Polysaccharide biosynthesis/export protein. (384 aa)    
Predicted Functional Partners:
wzc_1
Tyrosine-protein kinase wzc.
 
 
 0.946
wzb_1
Low molecular weight protein-tyrosine-phosphatase wzb.
  
 0.932
APC14029.1
Polysaccharide biosynthesis/export protein.
  
  
 
0.900
wzc_2
Tyrosine-protein kinase wzc.
 
 
 0.850
wzb_2
Low molecular weight protein-tyrosine-phosphatase wzb.
  
 0.707
galE_1
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
 0.677
oprB
Porin B precursor.
  
  
 0.634
ompA
Outer membrane protein A precursor; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
 0.588
APC10638.1
Hypothetical protein.
       0.587
ompD
Outer membrane porin protein OmpD precursor; Belongs to the Gram-negative porin family.
     
 0.555
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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