Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
wzb_1Low molecular weight protein-tyrosine-phosphatase wzb. (142 aa)    
Predicted Functional Partners:
APC10634.1
Polysaccharide biosynthesis/export protein.
  
 0.937
wzc_1
Tyrosine-protein kinase wzc.
 
 
 0.915
wzb_2
Low molecular weight protein-tyrosine-phosphatase wzb.
  
  
 
0.900
wzc_2
Tyrosine-protein kinase wzc.
 
 
 0.768
APC14029.1
Polysaccharide biosynthesis/export protein.
  
 0.744
galE_1
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.654
sacA
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
  
 
 0.594
APC10638.1
Hypothetical protein.
       0.587
ugd_1
UDP-glucose 6-dehydrogenase.
     
 0.511
hflC
Modulator of FtsH protease HflC; HflC and HflK could regulate a protease.
  
    0.491
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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