Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
outO_1Type 4 prepilin-like proteins leader peptide-processing enzyme. (272 aa)    
Predicted Functional Partners:
APC11004.1
ComEC family competence protein.
 
  
 0.810
dprA
Hypothetical protein.
  
  
 0.670
comEA
ComE operon protein 1.
   
  
 0.625
epsF
Type II secretion system protein F.
 
  
 0.609
gspE
Putative type II secretion system protein E.
 
 
 0.494
pilE1
Fimbrial protein precursor.
 
   
 0.469
rsmE
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.462
pilQ
Type IV pilus biogenesis and competence protein PilQ precursor; Belongs to the bacterial secretin family.
 
  
 0.457
arnT_2
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase.
 
     0.447
gshB
Glutathione synthetase; Belongs to the prokaryotic GSH synthase family.
       0.430
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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