Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
proWGlycine betaine/L-proline transport system permease protein ProW. (387 aa)    
Predicted Functional Partners:
proX_1
Glycine betaine-binding periplasmic protein precursor.
 
 0.999
proV
Glycine betaine/L-proline transport ATP-binding protein ProV.
 
 0.999
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
     
 0.551
ecfA1_1
Energy-coupling factor transporter ATP-binding protein EcfA1.
     
  0.540
lptG
Lipopolysaccharide export system permease protein LptG.
     
  0.540
lptF
Lipopolysaccharide export system permease protein LptF.
     
  0.540
znuB
High-affinity zinc uptake system membrane protein ZnuB.
  
  
 0.515
betI
HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
 
     0.455
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
  
 0.454
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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