Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
proVGlycine betaine/L-proline transport ATP-binding protein ProV. (399 aa)    
Predicted Functional Partners:
proW
Glycine betaine/L-proline transport system permease protein ProW.
 
 0.999
proX_1
Glycine betaine-binding periplasmic protein precursor.
 
 0.998
betI
HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
 
   
 0.490
cydD
ATP-binding/permease protein CydD.
 
    
0.439
yheI
Putative multidrug resistance ABC transporter ATP-binding/permease protein YheI.
 
     
0.403
cbpA
Curved DNA-binding protein.
  
   
 0.401
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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