Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dsbDThiol:disulfide interchange protein DsbD precursor. (692 aa)    
Predicted Functional Partners:
dsbE
Thiol:disulfide interchange protein DsbE.
 
 
 0.954
ykuV
Thiol-disulfide oxidoreductase YkuV.
 
 
 0.928
bdbD
Disulfide bond formation protein D precursor.
 
 
 0.927
traF
Hypothetical protein.
  
 
 0.903
APC10764.1
Hypothetical protein.
     
 0.899
cutA
Divalent-cation tolerance protein CutA.
  
  
 0.888
groS
10 kDa chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
     
 0.837
groL
60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
  
 0.818
msrB
Peptide methionine sulfoxide reductase MsrB.
   
 
 0.792
dsbC_1
Thiol:disulfide interchange protein DsbC precursor.
  
 
 0.781
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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