STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lyx_1L-xylulose/3-keto-L-gulonate kinase. (250 aa)    
Predicted Functional Partners:
lyx_2
L-xylulose/3-keto-L-gulonate kinase.
  
  0.999
ulaE
L-ribulose-5-phosphate 3-epimerase UlaE.
 
 
 0.922
sgbH
3-keto-L-gulonate-6-phosphate decarboxylase SgbH.
 
  
 0.916
lyx_3
L-xylulose/3-keto-L-gulonate kinase; Belongs to the FGGY kinase family.
  
  
 
0.909
ulaG
Putative L-ascorbate-6-phosphate lactonase UlaG.
    
  0.902
lsrF
Putative aldolase LsrF.
 
  
 0.773
glpK_1
Glycerol kinase; Belongs to the FGGY kinase family.
  
   
 0.766
APC10788.1
Glycerol-3-phosphate responsive antiterminator.
 
     0.764
yoaD
Putative 2-hydroxyacid dehydrogenase YoaD.
 
    0.712
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
    0.625
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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