Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ybgIPutative GTP cyclohydrolase 1 type 2. (247 aa)    
Predicted Functional Partners:
nlpI
Lipoprotein NlpI precursor; May be involved in cell division.
   
    0.655
kipA
KipI antagonist.
  
  
 0.638
ydcR
Putative HTH-type transcriptional regulator YdcR.
   
    0.566
APC10800.1
Hypothetical protein.
       0.500
yrbA
Transcriptional regulator BolA; Belongs to the BolA/IbaG family.
 
     0.442
ycgJ_2
Putative methyltransferase YcgJ; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.
  
  
 0.434
mlaF
Putative phospholipid import ATP-binding protein MlaF.
 
     0.416
mlaE
Putative phospholipid ABC transporter permease protein MlaE.
 
     0.409
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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