Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cydACytochrome bd-I ubiquinol oxidase subunit 1. (522 aa)    
Predicted Functional Partners:
cydB
Cytochrome bd-I ubiquinol oxidase subunit 2.
 0.999
appB
Cytochrome bd-II ubiquinol oxidase subunit 2.
 0.997
cydX
Cytochrome bd-I ubiquinol oxidase subunit X.
  
 0.979
appC
Cytochrome bd-II ubiquinol oxidase subunit 1.
  
  
 
0.917
cydD
ATP-binding/permease protein CydD.
 
  
 0.911
APC10964.1
Putative ABC transporter ATP-binding protein.
 
  
 0.830
ybgE
Hypothetical protein.
  
    0.802
yycF
Transcriptional regulatory protein YycF.
      
 0.715
cpxA
Sensor protein CpxA.
      
 0.682
cyoD
Cytochrome bo(3) ubiquinol oxidase subunit 4.
     
 0.601
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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