STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC10832.1CAAX amino terminal protease self- immunity. (275 aa)    
Predicted Functional Partners:
ycaO
Ribosomal protein S12 methylthiotransferase accessory factor YcaO.
  
  
 0.781
ydjA
Putative NAD(P)H nitroreductase YdjA.
  
  
 0.603
APC09794.1
Competence protein A.
  
     0.563
APC12616.1
OPT oligopeptide transporter protein.
  
     0.506
APC12831.1
Hypothetical protein.
  
     0.500
shlB_2
Hemolysin transporter protein ShlB precursor.
  
     0.489
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
       0.484
APC13455.1
Hypothetical protein.
  
     0.473
APC13414.1
Ribonuclease precursor.
  
     0.465
APC13454.1
Putative lipoprotein precursor.
  
     0.464
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.