STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhRInner membrane transport permease YbhR. (368 aa)    
Predicted Functional Partners:
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
  
 0.974
emrK_2
Putative multidrug resistance protein EmrK.
 
  
 0.954
ybhS_1
Inner membrane transport permease YbhS.
 
  
 
0.898
emrK_3
Putative multidrug resistance protein EmrK.
 
  
 0.704
acnR
HTH-type transcriptional repressor AcnR.
 
  
 0.657
yhhJ
Inner membrane transport permease YhhJ.
 
  
 
0.550
ydjA
Putative NAD(P)H nitroreductase YdjA.
  
  
 0.541
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
 
 
0.538
ybhS_2-2
ABC-2 family transporter protein.
 
    0.488
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
   
  0.439
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.