Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ybhF_1Putative ABC transporter ATP-binding protein YbhF. (580 aa)    
Predicted Functional Partners:
ybhS_1
Inner membrane transport permease YbhS.
  
 0.997
ybhR
Inner membrane transport permease YbhR.
  
 0.982
emrK_2
Putative multidrug resistance protein EmrK.
 
  
 0.977
yhhJ
Inner membrane transport permease YhhJ.
 
  
 0.844
emrK_3
Putative multidrug resistance protein EmrK.
 
  
 0.764
acnR
HTH-type transcriptional repressor AcnR.
 
    0.755
mdtN_2
Multidrug resistance protein MdtN.
 
  
 0.582
ybhS_2
Inner membrane transport permease YbhS.
 
  
 0.580
atpC
ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.570
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
 
  
0.543
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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