STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrK_2Putative multidrug resistance protein EmrK. (331 aa)    
Predicted Functional Partners:
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
 
  
 0.965
ybhR
Inner membrane transport permease YbhR.
 
  
 0.954
ybhS_1
Inner membrane transport permease YbhS.
 
  
 0.954
macB_1
Macrolide export ATP-binding/permease protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.768
macB_2
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.759
acnR
HTH-type transcriptional repressor AcnR.
 
  
 0.721
yhhJ
Inner membrane transport permease YhhJ.
 
  
 0.684
cusC
Cation efflux system protein CusC precursor.
 
 
 0.625
arpC
Antibiotic efflux pump outer membrane protein ArpC precursor.
 
 
 0.580
emrK_1
Putative multidrug resistance protein EmrK.
 
     0.546
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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