STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC10875.1Putative acetyltransferase. (152 aa)    
Predicted Functional Partners:
yvdD
LOG family protein YvdD; Belongs to the LOG family.
       0.673
APC11822.1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
  
     0.481
rmtB
16S rRNA (guanine(1405)-N(7))-methyltransferase.
  
     0.454
APC10321.1
Acetyltransferase (GNAT) family protein.
 
  
 0.450
yheS_2
Putative ABC transporter ATP-binding protein YheS.
       0.422
aacA4
Aminoglycoside N(6')-acetyltransferase type 1.
 
   0.416
ydaF_2
Putative ribosomal N-acetyltransferase YdaF.
  
   0.415
aadK
Aminoglycoside 6-adenylyltransferase.
 
   
 0.408
APC13006.1
Putative cyanate transporter.
  
     0.407
APC14022.1
Polysaccharide biosynthesis protein.
  
     0.404
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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