STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC10880.1Major Facilitator Superfamily protein. (396 aa)    
Predicted Functional Partners:
APC09794.1
Competence protein A.
  
     0.680
APC13088.1
Bacterial regulatory protein, tetR family.
  
     0.679
secM
Secretion monitor precursor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.601
folE
GTP cyclohydrolase 1.
       0.599
APC11696.1
Hypothetical protein.
  
     0.558
APC10037.1
Hypothetical protein.
  
     0.544
yebZ
Inner membrane protein YebZ.
  
     0.517
APC11114.1
Hypothetical protein.
  
     0.509
APC10882.1
Hypothetical protein.
       0.477
shlB_2
Hemolysin transporter protein ShlB precursor.
  
     0.471
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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