Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APC10917.1Putative assembly protein. (612 aa)    
Predicted Functional Partners:
slt
Soluble lytic murein transglycosylase precursor.
  
  
 0.727
lpoB
Penicillin-binding protein activator LpoB precursor; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b). Belongs to the LpoB family.
  
     0.726
smfA_5
Fimbria A protein precursor.
  
    0.719
ompD
Outer membrane porin protein OmpD precursor; Belongs to the Gram-negative porin family.
  
     0.717
rof
Rho-binding antiterminator.
 
     0.715
APC11804.1
Hypothetical protein.
  
   
 0.714
rcsD
Phosphotransferase RcsD.
 
     0.703
mrpA_7
Major MR/P fimbria protein precursor.
  
    0.702
uspA
Universal stress protein A.
  
     0.697
smfA_2
Fimbria A protein precursor.
  
    0.693
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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