STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC10917.1Putative assembly protein. (612 aa)    
Predicted Functional Partners:
lpoB
Penicillin-binding protein activator LpoB precursor; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b). Belongs to the LpoB family.
  
     0.726
APC11804.1
Hypothetical protein.
  
   
 0.719
smfA_5
Fimbria A protein precursor.
  
    0.718
ompD
Outer membrane porin protein OmpD precursor; Belongs to the Gram-negative porin family.
  
     0.717
rof
Rho-binding antiterminator.
 
     0.713
rcsD
Phosphotransferase RcsD.
 
     0.706
mrpA_7
Major MR/P fimbria protein precursor.
  
    0.701
uspA
Universal stress protein A.
  
     0.697
smfA_2
Fimbria A protein precursor.
  
    0.692
APC11973.1
Hypothetical protein.
  
     0.687
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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