Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APC11718.1 | cspD | RB151_020450 | RB151_012740 | Hypothetical protein. | Cold shock-like protein CspD. | 0.606 |
| APC13624.1 | cspD | RB151_039770 | RB151_012740 | Long-chain-fatty-acid--CoA ligase FadD13. | Cold shock-like protein CspD. | 0.433 |
| cspD | APC11718.1 | RB151_012740 | RB151_020450 | Cold shock-like protein CspD. | Hypothetical protein. | 0.606 |
| cspD | APC13624.1 | RB151_012740 | RB151_039770 | Cold shock-like protein CspD. | Long-chain-fatty-acid--CoA ligase FadD13. | 0.433 |
| cspD | fadD | RB151_012740 | RB151_021100 | Cold shock-like protein CspD. | Long-chain-fatty-acid--CoA ligase. | 0.433 |
| cspD | lcfB | RB151_012740 | RB151_007320 | Cold shock-like protein CspD. | Long-chain-fatty-acid--CoA ligase. | 0.433 |
| cspD | rmf | RB151_012740 | RB151_013490 | Cold shock-like protein CspD. | Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family. | 0.604 |
| cspD | rpmJ | RB151_012740 | RB151_042600 | Cold shock-like protein CspD. | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.401 |
| cspD | rpsL | RB151_012740 | RB151_003850 | Cold shock-like protein CspD. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.412 |
| fadD | cspD | RB151_021100 | RB151_012740 | Long-chain-fatty-acid--CoA ligase. | Cold shock-like protein CspD. | 0.433 |
| lcfB | cspD | RB151_007320 | RB151_012740 | Long-chain-fatty-acid--CoA ligase. | Cold shock-like protein CspD. | 0.433 |
| rmf | cspD | RB151_013490 | RB151_012740 | Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family. | Cold shock-like protein CspD. | 0.604 |
| rmf | rpmJ | RB151_013490 | RB151_042600 | Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family. | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.487 |
| rmf | rpsL | RB151_013490 | RB151_003850 | Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.487 |
| rpmJ | cspD | RB151_042600 | RB151_012740 | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | Cold shock-like protein CspD. | 0.401 |
| rpmJ | rmf | RB151_042600 | RB151_013490 | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family. | 0.487 |
| rpmJ | rpsL | RB151_042600 | RB151_003850 | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.994 |
| rpsL | cspD | RB151_003850 | RB151_012740 | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | Cold shock-like protein CspD. | 0.412 |
| rpsL | rmf | RB151_003850 | RB151_013490 | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family. | 0.487 |
| rpsL | rpmJ | RB151_003850 | RB151_042600 | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.994 |