Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
apxIB_1Toxin RTX-I translocation ATP-binding protein. (699 aa)    
Predicted Functional Partners:
hlyD
Hemolysin secretion protein D, chromosomal.
 
 
 0.987
apxIB_2
Toxin RTX-I translocation ATP-binding protein.
 
  
 
0.869
cya_1
Calmodulin-sensitive adenylate cyclase precursor.
 
  
 0.619
cya_2
Bifunctional hemolysin/adenylate cyclase precursor.
 
  
 0.543
APC10905.1
Hypothetical protein.
  
  
 0.542
APC10907.1
Hypothetical protein.
  
  
 0.542
tolC
Outer membrane protein TolC precursor.
  
  
 0.540
APC10992.1
LexA regulated protein.
       0.462
viuB
Vibriobactin utilization protein ViuB.
   
   0.462
ybfF
Esterase YbfF.
       0.425
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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