STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apxIB_2Toxin RTX-I translocation ATP-binding protein. (701 aa)    
Predicted Functional Partners:
hlyD
Hemolysin secretion protein D, chromosomal.
 
 0.973
apxIB_1
Toxin RTX-I translocation ATP-binding protein.
 
  
 
0.869
viuB
Vibriobactin utilization protein ViuB.
   
   0.686
cya_1
Calmodulin-sensitive adenylate cyclase precursor.
 
  
 0.604
cya_2
Bifunctional hemolysin/adenylate cyclase precursor.
 
  
 0.517
APC10905.1
Hypothetical protein.
  
  
 0.515
APC10907.1
Hypothetical protein.
  
  
 0.515
APC10992.1
LexA regulated protein.
       0.462
tolC
Outer membrane protein TolC precursor.
  
  
 0.450
ybfF
Esterase YbfF.
       0.425
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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