STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC11004.1ComEC family competence protein. (794 aa)    
Predicted Functional Partners:
APC09979.1
DNA utilization protein GntX.
 
  
 0.899
dprA
Hypothetical protein.
 
  
 0.896
outO_2
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
  
 0.818
epsF
Type II secretion system protein F.
 
  
 0.813
outO_1
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
  
 0.810
comEA
ComE operon protein 1.
 
  
 0.804
ftsK
DNA translocase FtsK.
 
  
 0.796
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
     
 0.782
tcpE
Toxin coregulated pilus biosynthesis protein E.
  
  
 0.772
tcpT
Toxin coregulated pilus biosynthesis protein T.
 
  
 0.770
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.