Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cya_1Calmodulin-sensitive adenylate cyclase precursor. (3255 aa)    
Predicted Functional Partners:
cya_2
Bifunctional hemolysin/adenylate cyclase precursor.
 
   
0.796
hlyD
Hemolysin secretion protein D, chromosomal.
 
  
 0.673
apxIB_1
Toxin RTX-I translocation ATP-binding protein.
 
  
 0.619
apxIB_2
Toxin RTX-I translocation ATP-binding protein.
 
  
 0.619
APC11004.1
ComEC family competence protein.
  
  
 0.501
APC11018.1
Putative metallo-hydrolase.
     
 0.437
APC10006.1
Helix-turn-helix domain protein.
  
    0.427
APC12585.1
Hypothetical protein.
 
     0.401
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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