Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC11033.1Hypothetical protein. (184 aa)    
Predicted Functional Partners:
pqiB_1
Paraquat-inducible protein B.
 
   
 0.965
pqiA
Paraquat-inducible protein A.
 
  
 0.948
rlmL
Ribosomal RNA large subunit methyltransferase K/L; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
       0.751
uup
ABC transporter ATP-binding protein uup.
       0.695
APC13480.1
Hypothetical protein.
  
     0.628
yebS
Inner membrane protein YebS.
 
  
 0.617
APC10654.1
Hypothetical protein.
  
     0.581
ynfD
Hypothetical protein.
  
     0.574
APC11576.1
Hypothetical protein.
  
     0.553
tamB
Translocation and assembly module TamB.
 
     0.532
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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