Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC11053.1Hypothetical protein. (583 aa)    
Predicted Functional Partners:
APC11051.1
Type VI secretion lipoprotein.
 
  
 0.984
APC11052.1
Hypothetical protein.
 
  
 0.982
APC11050.1
Gene 25-like lysozyme.
 
  
 0.978
APC11073.1
Hypothetical protein.
 
  
 0.971
APC11054.1
Hypothetical protein; ImpA-related N-terminal.
 
  
 0.962
APC11074.1
Hypothetical protein.
 
  
 0.949
APC11058.1
Hypothetical protein; Intracellular multiplication and human macrophage-killing.
 
  
 0.944
APC11072.1
Hypothetical protein.
 
  
 0.940
APC11071.1
Hypothetical protein.
 
  
 0.935
APC11049.1
ImpA domain protein.
 
  
 0.906
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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