Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC11058.1Hypothetical protein; Intracellular multiplication and human macrophage-killing. (1118 aa)    
Predicted Functional Partners:
APC11053.1
Hypothetical protein.
 
  
 0.944
APC11073.1
Hypothetical protein.
 
  
 0.940
APC11051.1
Type VI secretion lipoprotein.
 
  
 0.935
APC11060.1
Hypothetical protein.
 
   
 0.929
APC11074.1
Hypothetical protein.
 
  
 0.924
APC11072.1
Hypothetical protein.
 
  
 0.918
hcpA
Major exported protein.
 
  
 0.910
APC11052.1
Hypothetical protein.
 
  
 0.905
APC11050.1
Gene 25-like lysozyme.
 
  
 0.904
APC11054.1
Hypothetical protein; ImpA-related N-terminal.
 
  
 0.904
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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