Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
sdhSerine 3-dehydrogenase. (260 aa)    
Predicted Functional Partners:
APC12728.1
Glucose 1-dehydrogenase.
  
 
   0.686
fabG_6
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
   0.663
fabG_5
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
   0.642
adhR
HTH-type transcriptional regulator AdhR.
 
     0.638
fabG_2
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
   0.632
bdcA
Cyclic-di-GMP-binding biofilm dispersal mediator protein.
  
 
   0.559
pldh-t
Pyridoxal 4-dehydrogenase.
  
 
   0.509
cpnA
Cyclopentanol dehydrogenase.
  
 
   0.481
baiA2
Bile acid 7-dehydroxylase 2.
  
 
   0.456
rbtD
Ribitol 2-dehydrogenase.
 
   
 0.422
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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