STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdnIFormate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit. (218 aa)    
Predicted Functional Partners:
fdnH_1
Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
 
 
 0.977
fdnG_2
Formate dehydrogenase, nitrate-inducible, major subunit precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.966
fdnG_1
Formate dehydrogenase, nitrate-inducible, major subunit precursor.
 
 
 0.946
fdoH
Formate dehydrogenase-O iron-sulfur subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
 
 
 0.905
fdhE
Formate dehydrogenase accessory protein FdhE; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
  
 0.875
fdoG_1
Formate dehydrogenase-O major subunit precursor.
 
 
 0.871
fdoG_2
Formate dehydrogenase-O major subunit precursor.
 
 
 0.870
selB
Selenocysteine-specific elongation factor.
 
     0.664
fdnH_2
Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit.
 
 
 0.573
dmsB_1
Anaerobic dimethyl sulfoxide reductase chain B.
  
 
 0.506
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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