STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas3CRISPR-associated nuclease/helicase Cas3 subtype I-F/YPEST. (1159 aa)    
Predicted Functional Partners:
cas1
CRISPR-associated endonuclease Cas1.
 
  
 0.974
csy1
CRISPR-associated protein Csy1.
 
   
 0.961
csy2
CRISPR-associated protein Csy2.
 
   
 0.939
cas6f
CRISPR-associated endonuclease Cas6/Csy4.
 
   
 0.939
csy3
CRISPR-associated protein Csy3.
 
   
 0.938
APC11179.1
CRISPR-associated protein (Cas_Csy1).
     
 0.728
APC12563.1
Hypothetical protein.
 
     0.561
APC13679.1
Hypothetical protein.
 
     0.542
APC10609.1
DeoR-like helix-turn-helix domain protein.
 
     0.535
dus
Putative tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
      
 0.428
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.