Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csy3CRISPR-associated protein Csy3. (340 aa)    
Predicted Functional Partners:
csy2
CRISPR-associated protein Csy2.
 
 
 
 0.996
cas6f
CRISPR-associated endonuclease Cas6/Csy4.
 
 
 
 0.995
csy1
CRISPR-associated protein Csy1.
 
 
 
 0.977
cas3
CRISPR-associated nuclease/helicase Cas3 subtype I-F/YPEST.
 
   
 0.961
APC11179.1
CRISPR-associated protein (Cas_Csy1).
   
 
 0.953
cas1
CRISPR-associated endonuclease Cas1.
 
   
 0.934
APC12563.1
Hypothetical protein.
 
     0.443
APC13679.1
Hypothetical protein.
 
     0.420
APC10609.1
DeoR-like helix-turn-helix domain protein.
 
     0.414
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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