Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APC11197.1Phage integrase family protein. (192 aa)    
Predicted Functional Partners:
APC11899.1
Putative transporter.
  
     0.677
APC11199.1
Antitermination protein.
  
    0.643
APC11900.1
Putative transporter.
  
     0.620
APC11198.1
Hypothetical protein.
       0.549
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
   
  
 0.507
dmsC_5
Anaerobic dimethyl sulfoxide reductase chain C.
  
     0.497
ydgC
Inner membrane protein YdgC.
  
     0.489
APC10724.1
Lipoprotein.
  
     0.470
APC12272.1
Type I restriction enzyme EcoKI subunit R.
   
    0.448
tnpA
Putative transposase.
      
 0.436
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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