STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdZInner membrane protein YcdZ. (153 aa)    
Predicted Functional Partners:
APC11886.1
Hypothetical protein; Belongs to the UPF0267 family.
  
     0.754
dcuD_2
Putative cryptic C4-dicarboxylate transporter DcuD.
  
     0.697
yfbU
Hypothetical protein; Belongs to the UPF0304 family.
  
     0.645
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.636
APC13960.1
Hypothetical protein.
  
     0.632
APC11686.1
Hypothetical protein.
  
     0.613
tyrP_2
Tyrosine-specific transport protein.
  
     0.606
yciN
Hypothetical protein.
  
     0.603
chiP
Chitoporin precursor.
  
     0.602
ychN
DsrE/DsrF-like family protein.
  
     0.580
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.