Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kdgR_3Transcriptional regulator KdgR. (259 aa)    
Predicted Functional Partners:
kipA
KipI antagonist.
  
    0.866
iclR_2
Acetate operon repressor.
  
     0.772
kipR
HTH-type transcriptional regulator KipR.
  
     0.764
kdgK_1
2-dehydro-3-deoxygluconokinase.
 
   
 0.618
eda_2
Putative KHG/KDPG aldolase.
     
 0.483
siaP
Sialic acid-binding periplasmic protein SiaP precursor.
 
     0.433
siaT_1
Sialic acid TRAP transporter permease protein SiaT.
 
     0.432
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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