STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betIHTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes. (200 aa)    
Predicted Functional Partners:
betB_2
NAD/NADP-dependent betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
  
 0.916
betA_1
Oxygen-dependent choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
  
 0.905
betT_2
High-affinity choline transport protein; Belongs to the BCCT transporter (TC 2.A.15) family.
 
  
 0.653
betA_2
Oxygen-dependent choline dehydrogenase.
 
  
 0.647
mlr_3
4-methylaminobutanoate oxidase (formaldehyde-forming).
  
     0.492
APC13087.1
Putative ammonia monooxygenase.
  
     0.490
mlr_1
4-methylaminobutanoate oxidase (formaldehyde-forming).
  
     0.479
proV
Glycine betaine/L-proline transport ATP-binding protein ProV.
 
   
 0.426
ycaD_2
Putative MFS-type transporter YcaD.
  
     0.422
polB
DNA polymerase II.
  
     0.418
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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