Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dpiBSensor histidine kinase DpiB. (542 aa)    
Predicted Functional Partners:
dpiA
Transcriptional regulatory protein DpiA.
 
 0.998
citC
[Citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
   
 0.585
citE
Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.519
APC12374.1
Tripartite tricarboxylate transporter family receptor.
 
    0.514
APC12376.1
Tripartite tricarboxylate transporter TctA family protein.
 
     0.508
citX
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.
 
     0.499
citD
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
     0.493
citF
Citrate lyase alpha chain.
 
   
 0.484
cdaR
Carbohydrate diacid regulator.
  
     0.483
yehU
Sensor histidine kinase YehU.
  
   
 0.481
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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