Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dpiATranscriptional regulatory protein DpiA. (226 aa)    
Predicted Functional Partners:
dpiB
Sensor histidine kinase DpiB.
 
 0.998
arcB_2
Aerobic respiration control sensor protein ArcB.
     
 0.697
citC
[Citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
   
 0.560
citG
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase.
 
   
 0.526
citD
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
   
 0.501
citE
Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.500
APC12376.1
Tripartite tricarboxylate transporter TctA family protein.
 
     0.496
APC12374.1
Tripartite tricarboxylate transporter family receptor.
 
    0.488
citX
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.
 
     0.479
citF
Citrate lyase alpha chain.
 
     0.461
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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