STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC11278.1Hypothetical protein. (105 aa)    
Predicted Functional Partners:
yfgF
Cyclic di-GMP phosphodiesterase YfgF.
       0.813
APC11274.1
TraU protein.
       0.786
APC11276.1
Type-F conjugative transfer system pilin assembly protein.
       0.786
APC11277.1
Peptidase S26.
       0.786
APC11279.1
F pilus assembly Type-IV secretion system for plasmid transfer.
       0.761
dsbC_1
Thiol:disulfide interchange protein DsbC precursor.
       0.756
APC11273.1
Conjugal transfer mating pair stabilization protein TraN.
       0.536
APC11281.1
Hypothetical protein.
       0.464
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.