Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC11279.1F pilus assembly Type-IV secretion system for plasmid transfer. (815 aa)    
Predicted Functional Partners:
APC11277.1
Peptidase S26.
 
   
 0.946
APC11274.1
TraU protein.
 
   
 0.944
APC11276.1
Type-F conjugative transfer system pilin assembly protein.
 
     0.943
dsbC_1
Thiol:disulfide interchange protein DsbC precursor.
 
     0.943
APC11273.1
Conjugal transfer mating pair stabilization protein TraN.
 
     0.887
APC11286.1
TraE protein.
 
     0.845
APC11282.1
Hypothetical protein.
 
     0.844
APC11283.1
Type IV conjugative transfer system lipoprotein (TraV).
 
     0.843
APC11284.1
Bacterial conjugation TrbI-like protein.
 
     0.843
APC11285.1
TraK protein.
 
     0.841
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.