STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC11279.1F pilus assembly Type-IV secretion system for plasmid transfer. (815 aa)    
Predicted Functional Partners:
APC11277.1
Peptidase S26.
 
   
 0.945
APC11274.1
TraU protein.
 
   
 0.943
APC11276.1
Type-F conjugative transfer system pilin assembly protein.
 
     0.943
dsbC_1
Thiol:disulfide interchange protein DsbC precursor.
 
     0.943
APC11273.1
Conjugal transfer mating pair stabilization protein TraN.
 
     0.886
APC11284.1
Bacterial conjugation TrbI-like protein.
 
   
 0.848
APC11286.1
TraE protein.
 
     0.843
APC11282.1
Hypothetical protein.
 
     0.842
APC11283.1
Type IV conjugative transfer system lipoprotein (TraV).
 
     0.842
APC11285.1
TraK protein.
 
     0.840
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.