STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC11281.1Hypothetical protein. (1843 aa)    
Predicted Functional Partners:
APC11279.1
F pilus assembly Type-IV secretion system for plasmid transfer.
       0.478
dsbC_1
Thiol:disulfide interchange protein DsbC precursor.
       0.478
APC11274.1
TraU protein.
       0.464
yfgF
Cyclic di-GMP phosphodiesterase YfgF.
       0.464
APC11276.1
Type-F conjugative transfer system pilin assembly protein.
       0.464
APC11277.1
Peptidase S26.
       0.464
APC11278.1
Hypothetical protein.
       0.464
APC11282.1
Hypothetical protein.
       0.444
APC11286.1
TraE protein.
       0.441
APC11283.1
Type IV conjugative transfer system lipoprotein (TraV).
       0.436
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.