Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC11294.1AAA-like domain protein. (621 aa)    
Predicted Functional Partners:
APC11295.1
Putative helicase.
 
     0.949
APC11279.1
F pilus assembly Type-IV secretion system for plasmid transfer.
 
  
 0.802
traC
AAA-like domain protein.
 
  
 0.802
APC11365.1
Conjugative relaxosome accessory transposon protein.
 
   
 0.792
APC11393.1
Putative helicase.
 
     0.787
APC11386.1
TraE protein.
 
     0.786
APC11273.1
Conjugal transfer mating pair stabilization protein TraN.
 
     0.782
APC11274.1
TraU protein.
 
     0.782
APC11277.1
Peptidase S26.
 
     0.782
APC11284.1
Bacterial conjugation TrbI-like protein.
 
     0.782
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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