Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
APC11295.1Putative helicase. (992 aa)    
Predicted Functional Partners:
APC11294.1
AAA-like domain protein.
 
     0.949
traE-2
AAA-like domain protein.
 
     0.787
APC11274.1
TraU protein.
 
     0.776
APC11286.1
TraE protein.
 
     0.776
APC11273.1
Conjugal transfer mating pair stabilization protein TraN.
 
     0.775
APC11277.1
Peptidase S26.
 
     0.775
traN
Conjugal transfer mating pair stabilization protein TraN.
 
     0.775
traU
TraU protein.
 
     0.775
APC11276.1
Type-F conjugative transfer system pilin assembly protein.
  
     0.774
APC11282.1
Hypothetical protein.
  
     0.774
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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