STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC11332.1Transposase DDE domain protein. (88 aa)    
Predicted Functional Partners:
APC11333.1
Hypothetical protein.
 
     0.883
APC10623.1
Hypothetical protein.
 
     0.770
APC10627.1
Hypothetical protein.
 
     0.770
APC12555.1
Hypothetical protein.
  
     0.694
APC11904.1
Ferredoxin.
  
     0.668
APC11431.1
Transposase DDE domain protein.
  
     0.640
rmtB
16S rRNA (guanine(1405)-N(7))-methyltransferase.
  
     0.610
APC11328.1
Hypothetical protein.
       0.580
APC11329.1
Hypothetical protein.
       0.580
APC11330.1
Hypothetical protein.
       0.580
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.