STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC11333.1Hypothetical protein. (132 aa)    
Predicted Functional Partners:
APC11332.1
Transposase DDE domain protein.
 
     0.883
APC12555.1
Hypothetical protein.
  
     0.553
rmtB
16S rRNA (guanine(1405)-N(7))-methyltransferase.
  
     0.494
APC12585.1
Hypothetical protein.
  
     0.484
APC11904.1
Ferredoxin.
  
     0.481
mazF
mRNA interferase MazF.
       0.470
mazE
Antitoxin MazE.
       0.470
APC11421.1
Transposase DDE domain protein.
 
     0.455
APC11431.1
Transposase DDE domain protein.
  
     0.438
APC12583.1
Hypothetical protein.
  
     0.436
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.