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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
APC11358.1Transglycosylase SLT domain protein. (182 aa)    
Predicted Functional Partners:
APC11277.1
Peptidase S26.
 
   
 0.818
APC11294.1
AAA-like domain protein.
 
   
 0.777
traE-2
AAA-like domain protein.
 
   
 0.775
APC11295.1
Putative helicase.
  
     0.761
traK
TraK protein.
  
   
 0.751
APC11393.1
Putative helicase.
  
     0.749
APC11276.1
Type-F conjugative transfer system pilin assembly protein.
  
     0.737
APC11286.1
TraE protein.
  
     0.737
traF
Hypothetical protein.
 
 
 
 0.734
APC11475.1
Von Willebrand factor type A domain protein.
  
     0.734
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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