STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traNConjugal transfer mating pair stabilization protein TraN. (923 aa)    
Predicted Functional Partners:
traG
TraG-like protein, N-terminal region.
 
   
 0.943
traF
Hypothetical protein.
 
   
 0.919
traU
TraU protein.
 
   
 0.916
traC
AAA-like domain protein.
 
   
 0.907
traW
Type-F conjugative transfer system pilin assembly protein.
 
   
 0.871
traK
TraK protein.
 
   
 0.828
APC11274.1
TraU protein.
 
   
 0.790
APC11365.1
Conjugative relaxosome accessory transposon protein.
 
   
 0.788
APC11386.1
TraE protein.
 
     0.787
APC11286.1
TraE protein.
 
     0.785
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.